This page uses modern technologies that don't seem to be supported by your browser. Please consider using a recent version of Mozilla Firefox, Google Chrome or Microsoft Edge. Apple Safari might also work (untested).
STRNaming: STR Sequence Name Generator
STRNaming is an unbiased method to automatically generate short, informative and human-readable descriptions of STR alleles that works the same for any locus in use now or in the future.
This page is based on STRNaming version 1.2.0. Please refer to STRNaming Updates for more information regarding STRNaming versions and compatibility.
Reported Ranges
Please enter the names and genomic coordinates of the analysed sequence fragments. Coordinates are 1-based, using human genome reference sequence version 38 (GRCh38). Each line should contain a marker name and a coordinate range, in that order. Various formats are supported, such as "chr13:82148021-82148104", "13:82148021..82148104" or "Chromosome 13, from 82148021 to 82148104" or variations thereof. Coordinate ranges should exclude the primer binding sites. By default, the ISFG Minimum Range GRCh38 coordinates are used.
This online version of STRNaming is currently limited to the most commonly used forensic STR markers. If a message "Reference sequence unavailable" shows up for any of your markers, please contact us via email or GitHub to have them added! Alternatively, install FDSTools and use the 'seqconvert' tool to access the Python version of STRNaming.
D1S1677 Chr1:163590022-163590097
D1S1656 Chr1:230769601-230769687
TPOX Chr2:1489647-1489692
D2S441 Chr2:68011943-68011999
D2S1776 Chr2:168788889-168788940
D2S1338 Chr2:218014855-218014954
D3S1358 Chr3:45540733-45540807
D3S4529 Chr3:85803473-85803538
D4S2408 Chr4:31302794-31302838
FGA Chr4:154587729-154587827
D5S2800 Chr5:59403126-59403203
D5S818 Chr5:123775548-123775603
CSF1PO Chr5:150076318-150076380
SE33 Chr6:88277125-88277281
D6S1043 Chr6:91740219-91740277
D6S474 Chr6:112557946-112558022
D7S820 Chr7:84160200-84160281
D8S1179 Chr8:124894859-124894922
D9S1122 Chr9:77073812-77073879
D10S1248 Chr10:129294239-129294299
TH01 Chr11:2171082-2171120
vWA Chr12:5983954-5984049
D12S391 Chr12:12297011-12297099
D12ATA63 Chr12:107928584-107928632
D13S317 Chr13:82148021-82148104
D14S1434 Chr14:94842050-94842110
Penta E Chr15:96831008-96831044
D16S539 Chr16:86352698-86352749
D17S1301 Chr17:74684851-74684906
D18S51 Chr18:63281663-63281756
D19S433 Chr19:29926212-29926303
D20S482 Chr20:4525688-4525754
D21S11 Chr21:19181969-19182105
Penta D Chr21:43636185-43636282
D22S1045 Chr22:37140283-37140341
DYS393 ChrY:3263107-3263163
DYS505 ChrY:3772786-3772843
DYS456 ChrY:4402915-4402983
DYS570 ChrY:6993186-6993264
DYS576 ChrY:7185314-7185394
DYS522 ChrY:7547580-7547629
DYS458 ChrY:7999831-7999907
DYS449 ChrY:8349969-8350144
DYS481 ChrY:8558328-8558409
DYS627 ChrY:8781940-8782077
DYS19 ChrY:9684374-9684447
DYS391 ChrY:11982085-11982142
DYS635 ChrY:12258854-12258955
DYS437 ChrY:12346263-12346332
DYS439 ChrY:12403512-12403570
DYS389I ChrY:12500439-12500499
DYS389II ChrY:12500439-12500618
DYS438 ChrY:12825885-12825953
DYS612 ChrY:13640724-13640839
DYS390 ChrY:15163061-15163170
DYS518 ChrY:15207984-15208156
DYS643 ChrY:15314128-15314194
DYS533 ChrY:16281342-16281400
Y-GATA-H4 ChrY:16631669-16631724
DYS385 b ChrY:18639700-18639784
DYS385 a ChrY:18680604-18680700
DYS461 ChrY:18888800-18888855
DYS460 ChrY:18888949-18888999
DYS549 ChrY:19358334-19358395
DYS392 ChrY:20471982-20472030
DYS448 ChrY:22218919-22219087
DYF387S1 fragment 1 ChrY:23785357-23785508
DYF387S1 fragment 2 ChrY:25884573-25884728
DXS10135 ChrX:9338298-9338420
DXS8378 ChrX:9402256-9402305
DXS7132 ChrX:65435641-65435709
DXS10074 ChrX:67757311-67757414
DXS10103 ChrX:134284955-134285044
HPRTB ChrX:134481488-134481565
DXS7423 ChrX:150542518-150542596
Allele naming sequence input
Please enter the sequences to process below. Each line should contain a marker name and a sequence separated by a space, comma, or semicolon. Sequence data should exclude the primers and should correspond exactly to the range entered above. If you need to reverse-complement some sequences, try this.
D1S1677 GTGTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCATTCCGTCC
D1S1656 TTAAACACACACACACCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTACATC
TPOX TCACTGAATGAATGAATGAATGAATGAATGAATGAATGTTTGGGCA
D2S441 AACTTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATATCA
D2S1776 AAAAAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGATA
D2S1338 GGAGGGAAGGAAGGACGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGCAGGCAGGCAGGCAGGCAGGCAGGCAAGGC
D3S1358 CATGTATCTATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATGAGA
D3S4529 AGAAACAGACAGATAGATAGATAGATAAATAGATAGATAGATAGATAGATAGATAGATAGATCAAT
D4S2408 ATGCATCTATCTATCTATCTATCTATCTATCTATCTATCTAATGG
FGA GAAGAAAGGAAGGAAGGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAAAAGAAAGAAAGAAACTAG
D5S2800 ATAATAGGTAGGTAGGTAGACAGACAGACAGACAGACAGACAGACAGACAGATAGATAGATAGATTGATTGATTTATG
D5S818 ATACCTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTTCAA
CSF1PO CTTCCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAATCT
SE33 CTTGCTCTTTCTTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTTTCTTTCTTTCTCTTTCTTTCTTTTTCTTTCT
D6S1043 AATCCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTGATCT
D6S474 CAATTAGATAGATAGATAGATAGATGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAAAAG
D7S820 AGATTAAAAAAAACTATCAATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCGTTA
D8S1179 TTCGTATCTATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATTCCCC
D9S1122 TAACTGTAGATAGGTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATTAA
D10S1248 TGAGTGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAATGA
TH01 ATGGTGAATGAATGAATGAATGAATGAATGAATGAGGGA
vWA CATAGGATGGATGGATAGATGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGACAGACAGATAGATCAAT
D12S391 TGCATAGGTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGACAGACAGACAGACAGATGAGA
D12ATA63 AAAATGTTGTTGTTGTTATTATTATTATTATTATTATTATTATTACTTG
D13S317 ACATTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCAATCAATCATCTATCTATCTTTCTGTCTGTCTTTTT
D14S1434 ACGACTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATC
Penta E ACAATTTTCTTTTCTTTTCTTTTCTTTTCTTTGAGAC
D16S539 GGTGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATCAT
D17S1301 TGTGAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATCCAT
D18S51 TCTCAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAGAGAGAGGAAAGAAA
D19S433 ATCTTCTCTCTTTCTTCCTCTCTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTACCTTCTTTCCTTCAACA
D20S482 TAAGAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAGATT
D21S11 GCCTTCTATCTATCTATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTATCTATCTATATCTATCTATCTATCATCTATCTATCCATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCGTCT
Penta D TCTCAAGAAAGAAAAAAAAGAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAAACGAAGGGG
D22S1045 TCTCATTATTATTATTATTATTATTATTATTATTATTATTATTATTACTATTATTGTTA
DXS10135 CTACAAGAAAGAAAGAGAAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAGAATAGAAAAGAAGAGAAG
DXS8378 TAAAATATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGTGAC
DXS7132 ATAGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGTCAG
DXS10074 GCATACACACACAGAGAGAGAGAGAGAGAAAAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGAAAATAG
DXS10103 TAACTAGATAGACTGACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGACAGATAGATATTCA
HPRTB TATCTCTATCTGTCTATCTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAAAGC
DXS7423 TATGTGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGAAGGACAGATGGATGGATGGATGGGGAG
DYS393 ATACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATGTA
DYS505 TCTCTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTC
DYS456 TGTAAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATTCC
DYS570 TCCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTGT
DYS576 AATAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAGCCA
DYS522 AGATGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGA
DYS458 AAAGGAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAGG
DYS449 TCTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTCCTCCTCTTTCTTTCCTTCTTTCTTTCTTTTCCTCTTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTT
DYS481 AGCATGCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTTGAG
DYS627 AGGGAGAAAGAAAGAAAGGAAAAAAGAAAGAAAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAGAGAAAGAGAGAGGGAG
DYS19 ACTATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTACCTATCTATCTATCTAAAAC
DYS391 TCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTGCCTATC
DYS635 ATGTGATAGATAGATAGATAGATAGATAGATAGATAGATAGATACATACATAGATAGATACATACATAGATAGATACATACATAGATAGATAGATAGAGATT
DYS437 CCGGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTGTCTGTCTATCTATCTATCTATCATCT
DYS439 TAGAAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAAAGT
DYS389I AGGGAGGGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGATACA
DYS389II AGGGAGGGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGATACATAGATAATACAGATGAGAGTTGGATACAGAAGTAGGTATAATGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGACAGACAGACACACAC
DYS438 TATATTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTATTT
DYS612 TTTGCCTCCTCCTCCTCCTCTTTCTTCTTCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTCA
DYS390 AGATGATAGATAGATAGATAGACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGACAGACAGACAGACAGACAGATAGATAGA
DYS518 GAAAAAAGAAAGAAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGGAGAAAGAAAGAAAGAAAGGAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGAGGGAGG
DYS643 GTGCCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTCTTT
DYS533 TATCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCT
Y-GATA-H4 CCATTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTACCTA
DYS385 b CTTTCTTTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCCTTCCTTCCTTCCTTCCTTCCTTTCTT
DYS385 a AAGAAAGGAAGGAAGGAAGGAAGGAAGGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAAAGAAAG
DYS461 CTTATCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTACCTA
DYS460 CTATTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATGTCA
DYS549 AGATGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAAAAA
DYS392 AGTAAATAATAATAATAATAATAATAATAATAATAATAATAATAAATAA
DYS448 ATAAAGAGATAGAGATAGAGATAGAGATAGAGATAGAGATAGAGATAGAGATAGAGATAGAGATAGAGATATAGAGATAGAGAGATAGAGATAGAGATAGATAGATAGAGAAAGAGATAGAGATAGAGATAGAGATAGAGATAGAGATAGAGATAGAGATAGAGAGGTA
DYF387S1 fragment 1 AAAAAAAGAAAGAAAGGTAGGAAGGAAGGAAGGAAGAAAGAAAGGAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAATAAA
DYF387S1 fragment 2 TTTATTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTCCTTTCTTTCTTCCTTCCTTCCTTCCTACCTTTCTTTCTTTTTTT
Allele name output
The resulting allele names are displayed below.
Additionally, the Sequence Identifier (SID) nomenclature is accessible. This nomenclature was independently developed by Young et al. and used with their permission. See: A nomenclature for sequence-based forensic DNA analysis. Forensic Sci Int Genet, 42, 14–20.
Toggle full width Copy to clipboard